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<p class="MsoNormal">Hi Kai,<o:p></o:p></p>
<p class="MsoNormal">As promised, this represents an update on the issue you reported below.
<o:p></o:p></p>
<p class="MsoNormal">Thanks to Carlos Rueda, the SWEET issue has been fixed. <o:p>
</o:p></p>
<p class="MsoNormal">We tracked it at https://github.com/ESIPFed/cor/issues/63<o:p></o:p></p>
<p class="MsoNormal">Thank you<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="line-height:11.65pt"><b><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#606062">Dr. Lewis John McGibbney Ph.D., B.Sc. (Hons)</span></b><span style="font-family:"Times New Roman",serif;color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#606062">Enterprise Search Technologist,
</span><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#7F7F7F">Web and Mobile Application Development Group (172B)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#7F7F7F">Application, Consulting, Development and Engineering Section (1722)<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:11.65pt"><i><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#606062">Information and Technology Solutions Directorate</span></i><span style="font-size:12.0pt;font-family:"Times New Roman",serif;color:black"><o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:11.65pt"><b><span lang="PT-BR" style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#606062">O</span></b><span lang="PT-BR" style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#606062"> (818) 393-7402 | <b>M</b> (626)
487-3476</span><span lang="PT-BR" style="font-size:12.0pt;font-family:"Times New Roman",serif;color:black"><o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:11.65pt"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black"><a href="https://jpl.webex.com/meet/lmcgibbn"><span lang="PT-BR" style="color:#0563C1">https://jpl.webex.com/meet/lmcgibbn</span></a></span><span lang="PT-BR" style="font-size:12.0pt;font-family:"Times New Roman",serif;color:black"><o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in;line-height:11.65pt"><span lang="PT-BR" style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black"> </span><span lang="PT-BR" style="font-size:12.0pt;font-family:"Times New Roman",serif;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#606062">JPL</span></b><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#606062"> | jpl.nasa.gov</span><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">Esip-cor <esip-cor-bounces@lists.esipfed.org> on behalf of "Mcgibbney, Lewis J (172B) via Esip-cor" <esip-cor@lists.esipfed.org><br>
<b>Reply-To: </b>"Mcgibbney, Lewis J (172B)" <lewis.j.mcgibbney@jpl.nasa.gov><br>
<b>Date: </b>Wednesday, June 17, 2020 at 1:16 PM<br>
<b>To: </b>Kai Blumberg <kblumberg@email.arizona.edu><br>
<b>Cc: </b>Anne Thessen <annethessen@gmail.com>, "esip-semanticharmonization@lists.esipfed.org" <esip-semanticharmonization@lists.esipfed.org>, Gary Berg-Cross <gbergcross@gmail.com>, Mark Schildhauer <schild@nceas.ucsb.edu>, ESIP COR via Esip-cor <esip-cor@lists.esipfed.org>,
Pier Buttigieg <pbuttigi@mpi-bremen.de>, "Charlesl.lm8ms F. Vardeman II" <charles.vardeman@gmail.com><br>
<b>Subject: </b>Re: [Esip-cor] [EXT]Re: [EXTERNAL] SWEET ENVO Cryosphere term mapping<o:p></o:p></span></p>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-left:.5in">Hi Kai,<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:1.0in"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">Kai Blumberg <kblumberg@email.arizona.edu><br>
<b>Date: </b>Wednesday, June 17, 2020 at 12:21 PM<br>
<b>To: </b>"Mcgibbney, Lewis J (172B)" <lewis.j.mcgibbney@jpl.nasa.gov><br>
<b>Cc: </b>"esip-semanticharmonization@lists.esipfed.org" <esip-semanticharmonization@lists.esipfed.org>, Ruth Duerr <ruth.duerr3@gmail.com>, Anne Thessen <annethessen@gmail.com>, "Charlesl.lm8ms F. Vardeman II" <charles.vardeman@gmail.com>, Gary Berg-Cross
<gbergcross@gmail.com>, Pier Buttigieg <pbuttigi@mpi-bremen.de>, Mark Schildhauer <schild@nceas.ucsb.edu><br>
<b>Subject: </b>Re: [EXT]Re: [EXTERNAL] SWEET ENVO Cryosphere term mapping</span><o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:1.0in"> <o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:1.0in">Yes I did, SWEET is small enough that I find working with it manually to be most efficient, especially for a task like this.
<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">OK great.<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:1.0in">Unfortunately as far as I can tell, SWEET terms still don’t have definitions at least the version shown on bioportal,
<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:1.0in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">Progress on this issue can be seen at
<a href="https://github.com/ESIPFed/sweet-tools/pull/5">https://github.com/ESIPFed/sweet-tools/pull/5</a><o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">I will go back to complete that item which will hopefully resolve a large part of this problem<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:1.0in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:1.0in">and their id’s which should be URLS e.g.,
<a href="http://sweetontology.net/matrWater/Hydrate">http://sweetontology.net/matrWater/Hydrate</a> don’t seem to resolve.
<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">Thanks for picking this up. I can replicate the behavior. Here is the issue… the pyLODE service (<a href="https://github.com/mmisw/orr-portal/wiki/Using-pyLODE-for-ontology-documentation">https://github.com/mmisw/orr-portal/wiki/Using-pyLODE-for-ontology-documentation</a>)
is servicing Brower-based traffic to SWEET HTTP URIs. For example, see <a href="http://sweetontology.net/matrWater">
http://sweetontology.net/matrWater</a>. For what I can tell right now, the problem seems to be servicing embedded/nested content… which is strange. Maybe we have some sort of rule which needs to be corrected. I’m going to look into it right now.<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:1.0in"> <o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:1.0in">There are some automated mappings for example
<a href="https://github.com/EnvironmentOntology/envo/blob/master/mappings/sweetrealm-mapping.tsv">
this one made by Chris Mungall 5 years ago</a>. Bioportal also has a feature that does automated mappings, see
<a href="https://bioportal.bioontology.org/mappings/show/SWEET?target=http://data.bioontology.org/ontologies/ENVO&height=600&width=800">
this one between SWEET and ENVO</a>. <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">I’ve seen these before and they are useful. I was unable to reproduce them myself and spoke to Chris Mungall about this ages ago. We didn’t get any further with it at the time.<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">Right now, I’m going to work on the COR issues you’ve highlighted. I’m tracking it through
<a href="https://github.com/mmisw/orr-portal/issues/167">https://github.com/mmisw/orr-portal/issues/167</a><o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">I’ll follow-up her once we fix this.<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in"> <o:p></o:p></p>
<p class="MsoNormal" style="margin-left:.5in">Lewis<o:p></o:p></p>
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