[Esip-semanticharmonization] [EXT]Re: [EXTERNAL] SWEET ENVO Cryosphere term mapping

[Kai Blumberg]

Yes I did, SWEET is small enough that I find working with it manually to be
most efficient, especially for a task like this. Unfortunately as far as I
can tell, SWEET terms still don’t have definitions at least the version
shown on bioportal, and their id’s which should be URLS e.g.,
http://sweetontology.net/matrWater/Hydrate don’t seem to resolve.

There are some automated mappings for example this one made by Chris
Mungall 5 years ago
<https://github.com/EnvironmentOntology/envo/blob/master/mappings/sweetrealm-mapping.tsv>.
Bioportal also has a feature that does automated mappings, see this one
between SWEET and ENVO
<https://bioportal.bioontology.org/mappings/show/SWEET?target=http://data.bioontology.org/ontologies/ENVO&height=600&width=800>.


Cheers,
Kai

On Wed, Jun 17, 2020 at 12:11 PM Mcgibbney, Lewis J (172B) <
lewis.j.mcgibbney at jpl.nasa.gov> wrote:

> *External Email*
>
> Hi Kai,
>
> Interesting.
>
> Did you do this manually?
>
> Thanks
>
>
>
> *Dr. Lewis John McGibbney Ph.D., B.Sc. (Hons)*
>
> Enterprise Search Technologist, Web and Mobile Application Development
> Group (172B)
>
> Application, Consulting, Development and Engineering Section (1722)
>
> *Information and Technology Solutions Directorate*
>
> *O* (818) 393-7402  |  *M* (626) 487-3476
>
> https://jpl.webex.com/meet/lmcgibbn
>
>
>
> *JPL*  |  jpl.nasa.gov
>
>
>
> *From: *Kai Blumberg <kblumberg at email.arizona.edu>
> *Date: *Wednesday, June 17, 2020 at 12:10 PM
> *To: *"esip-semanticharmonization at lists.esipfed.org" <
> esip-semanticharmonization at lists.esipfed.org>
> *Cc: *Ruth Duerr <ruth.duerr3 at gmail.com>, Anne Thessen <
> annethessen at gmail.com>, "Charlesl.lm8ms F. Vardeman II" <
> charles.vardeman at gmail.com>, Gary Berg-Cross <gbergcross at gmail.com>, Pier
> Buttigieg <pbuttigi at mpi-bremen.de>, "Mcgibbney, Lewis J (172B)" <
> lewis.j.mcgibbney at jpl.nasa.gov>, Mark Schildhauer <schild at nceas.ucsb.edu>
> *Subject: *[EXTERNAL] SWEET ENVO Cryosphere term mapping
>
>
>
> Hey everyone, I've created this mapping between what I can tell are all
> the cryosphere terms from SWEET with terms from ENVO:
> https://docs.google.com/spreadsheets/d/1O-3UW1RLp1UNaS2sNWfpIULmgIedB0NCBsYd1MaWWZY/edit?usp=sharing
>
>
>
> There should be some material here for Pier to work with in the next demo
> about SWEET terms missing from ENVO.
>
>
>
> Cheers,
>
> Kai
>
>
>
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